PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G212900.1
Common NameB456_004G212900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 87aa    MW: 10037.6 Da    PI: 10.2499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G212900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-085441255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        RR++i +++  L++l+P +    +k  +Ka +L + ++Y++sLq
  Gorai.004G212900.1  5 RREKISERMKYLQDLVPGC----NKITDKAGMLNEIINYVQSLQ 44
                        9******************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.443143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-5449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-6547No hitNo description
PfamPF000102.5E-6544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-12553IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-14655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MINVRREKIS ERMKYLQDLV PGCNKITDKA GMLNEIINYV QSLQRQVEEP KEKKKKQVLS  60
TGCQAQAKKP NSKHDPFQKR SDHDQI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431463e-52AC243146.1 Gossypium hirsutum clone MX073K14-jni, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491366.12e-25PREDICTED: GTP-binding protein SAR1-like isoform X2
RefseqXP_012491372.12e-25PREDICTED: GTP-binding protein SAR1-like isoform X2
RefseqXP_012491379.12e-25PREDICTED: GTP-binding protein SAR1-like isoform X2
SwissprotQ8GY611e-22BH063_ARATH; Transcription factor bHLH63
TrEMBLA0A0D2PFY34e-58A0A0D2PFY3_G
STRINGGLYMA06G01430.13e-21(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-22bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]